Aligning the Symmetry of the Type III Secretion System Needle Complex. (2020) J Chem Inf Model.
Selected Publications
2020
-
-
A Slippery Scaffold: Synthesis and Recycling of the Bacterial Cell Wall Carrier Lipid. (2020) J Mol Biol.
-
Crystallographic analysis of Staphylococcus aureus LcpA, the primary wall teichoic acid ligase. (2020) J Biol Chem. 295: 2629-2639.
-
Towards capture of dynamic assembly and action of the T3SS at near atomic resolution. (2020) Curr Opin Struct Biol. 61: 71-78.
2019
-
On the road to structure-based development of anti-virulence therapeutics targeting the type III secretion system injectisome. (2019) Medchemcomm. 10: 1273-1289.
-
T3S injectisome needle complex structures in four distinct states reveal the basis of membrane coupling and assembly. (2019) Nat Microbiol. 4: 2010-2019.
-
Structural Insights into Bacteriophage GIL01 gp7 Inhibition of Host LexA Repressor. (2019) Structure. 27: 1094-1102.
-
Structural insight into YcbB-mediated beta-lactam resistance in Escherichia coli. (2019) Nat Commun. 10: 1849.
-
A Hybrid Secretion System Facilitates Bacterial Sporulation: A Structural Perspective. (2019) Microbiol Spectr. 7
2018
-
Structural and kinetic analyses of penicillin-binding protein 4 (PBP4)-mediated antibiotic resistance in Staphylococcus aureus. (2018) J Biol Chem. 293: 19854-19865.
-
Cryo-EM analysis of the T3S injectisome reveals the structure of the needle and open secretin. (2018) Nat Commun. 9: 3840.
-
Heptosyltransferase I Catalysis and Inhibition through the Structure of Its Ternary Complex. (2018) Structure 26: 1399-1407.
-
Structural Basis for Binding of Fluorescent CMP-Neu5Ac Mimetics to Enzymes of the Human ST8Sia Family. (2018) ACS Biol. 13: 2320-2328.
-
Enzyme structures of the bacterial peptidoglycan and wall teichoic acid biogenesis pathways. (2018) Curr Opin Struct Biol. 53: 45-58.
-
IpdAB, a virulence factor in Mycobacterium tuberculosis, is a cholesterol ring-cleaving hydrolase. (2018) Proc Natl Acad Sci U S A. 115: E3378-E3387.
-
Secretins revealed: structural insights into the giant gated outer membrane portals of bacteria. (2018) Curr Opin Struct Biol. 51: 61-72.
-
Crystal structure of an intramembranal phosphatase central to bacterial cell-wall peptidoglycan biosynthesis and lipid recycling. (2018) Nat Commun. 20: 1159.
-
PBP4 activity and its overexpression are necessary for PBP4-mediated high-level β-lactam resistance. (2018) J Antimicrob Chemother. 73: 1177-1180.
-
Structural characterization of SpoIIIAB sporulation-essential protein in Bacillus subtilis. (2018) J Struct Biol. 202: 105-112.
2017
-
B. subtilis LytR-CpsA-Psr Enzymes Transfer Wall Teichoic Acids from Authentic Lipid-Linked Substrates to Mature Peptidoglycan In Vitro. (2017) Cell Chem Biol. 24: 1537-1546.
-
Near-atomic resolution cryoelectron microscopy structure of the 30-fold homooligomeric SpoIIIAG channel essential to spore formation in Bacillus subtilis. (2017) Proc Natl Acad Sci U S A. 114: E7073-E7081.
-
X-ray crystallographic structure of a bacterial polysialyltransferase provides insight into the biosynthesis of capsular polysialic acid. (2017) Sci Rep. 7: 5842.
-
Assembly, structure, function and regulation of type III secretion systems. (2017) Nat Rev Microbiol. 15: 323-337.
-
High-Level Resistance of Staphylococcus aureus to β-Lactam Antibiotics Mediated by Penicillin-Binding Protein 4 (PBP4). (2017) Antimicrob Agents Chemother. 61: e02727-16.
-
Structural Insights into Inhibition of Escherichia coli Penicillin-binding Protein 1B. (2017) J Biol Chem. 292: 979-993.
2016
-
Near-atomic-resolution cryo-EM analysis of the Salmonella T3S injectisome basal body. (2016) Nature. 540: 597-601.
-
Structure and Mechanism of Staphylococcus aureus TarS, the Wall Teichoic Acid β-glycosyltransferase Involved in Methicillin Resistance. (2016) PLoS Pathog. 12: e1006067.
-
Identification of Two Phosphate Starvation-induced Wall Teichoic Acid Hydrolases Provides First Insights into the Degradative Pathway of a Key Bacterial Cell Wall Component. (2016) J Biol Chem. 291: 26066-26082.
-
One ring to rule them all: Current trends in combating bacterial resistance to the β-lactams. (2016) Protein Sci. 25: 787-803.
-
Structural and Kinetic Characterization of Diazabicyclooctanes as Dual Inhibitors of Both Serine-β-Lactamases and Penicillin-Binding Proteins. (2016) ACS Chem Biol. 11: 864-8.
-
The Structure of a Type 3 Secretion System (T3SS) Ruler Protein Suggests a Molecular Mechanism for Needle Length Sensing. (2016) J Biol Chem. 291: 1676-91.
2015
-
Structural analysis of SepL, an enteropathogenic Escherichia coli type III secretion-system gatekeeper protein. (2015) Acta Crystallogr F Struct Biol Commun. 71: 1300-8.
-
Antagonism screen for inhibitors of bacterial cell wall biogenesis uncovers an inhibitor of undecaprenyl diphosphate synthase. (2015) Proc Natl Acad Sci U S A. 112: 11048-53.
-
Structure of human ST8SiaIII sialyltransferase provides insight into cell-surface polysialylation. (2015) Nat Struct Mol Biol. 22: 627-35.
-
Structure and mechanism of Staphylococcus aureus TarM, the wall teichoic acid α-glycosyltransferase. (2015) Proc Natl Acad Sci U S A. 112: E576-85.
-
The modular structure of the inner-membrane ring component PrgK facilitates assembly of the type III secretion system basal body. (2015) Structure. 23: 161-172.
-
The Salmonella type III secretion system virulence effector forms a new hexameric chaperone assembly for export of effector/chaperone complexes. (2015) J Bacteriol. 197: 672-5.
2014
-
Substrate specificities and conformational flexibility of 3-ketosteroid 9α-hydroxylases. (2014) J Biol Chem. 289: 25523-36.
-
Aspergillomarasmine A overcomes metallo-β-lactamase antibiotic resistance. (2014) Nature. 510: 503-6.
-
Structural insights into the lipoprotein outer membrane regulator of penicillin-binding protein 1B. (2014) J Biol Chem. 289: 19245-53.
-
Assembly and structure of the T3SS. (2014) Biochim Biophys Acta. 1843: 1649-63.
2013
-
Polyphosphate suppresses complement via the terminal pathway. (2013) Blood. 123: 768-76.
-
Fortifying the wall: synthesis, regulation and degradation of bacterial peptidoglycan. (2013) Curr Opin Struct Biol. 23: 695-703.
-
Targeting metallo-β-lactamase enzymes in antibiotic resistance. (2013) Future Med Chem. 5: 1243-63.
-
A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly. (2013) PLoS Pathog. 9: e1003307.
-
Structure-based mutagenic analysis of mechanism and substrate specificity in mammalian glycosyltransferases: Porcine ST3Gal-I (2013) Glycobiology 23: 536-45
2012
-
Optimization and structure-activity relationships of a series of potent inhibitors of methicillin-resistant Staphylococcus aureus (MRSA) pyruvate kinase as novel antimicrobial agents (2012) Bioorg. Med. Chem. 20: 7069-7082.
-
Structural insights into the anti-methicillin-resistant Staphylococcus aureus (MRSA) activity of ceftobiprole (2012) J. Biol. Chem. 287: 32096-32102.
-
The zinc regulated antivirulence pathway of Salmonella is a multiprotein immunoglobulin adhesion system (2012) J. Biol. Chem. 287: 32324-32337.
-
New Delhi metallo-beta-lactamase: structural insights into beta-lactam recognition and inhibition (2012) J. Am. Chem. Soc. 134: 11362-11365.
-
Structural perspective of peptidoglycan biosynthesis and assembly (2012) Annu. Rev. Biochem. 81: 451-478.
-
A protein export pathway involving Escherichia coli porins (2012) Structure 20: 1154-1166.
-
Characterization of alpha2,3- and alpha2,6-sialyltransferases from Helicobacter acinonychis (2012) Glycobiology 22: 997-1006.
-
Structural insight into the bacterial mucinase StcE essential to adhesion and immune evasion during enterohemorrhagic E. coli infection (2012) Structure 20: 707-717.
-
Sec24 interaction is essential for localization and virulence-associated function of the bacterial effector protein NleA (2012) Cell. Microbiol. 14: 1206-1218.
-
Structure of Salmonella effector protein SopB N-terminal domain in complex with host Rho GTPase Cdc42 (2012) J. Biol. Chem. 287: 13348-13355.
-
Cheminformatics-driven discovery of selective, nanomolar inhibitors for staphylococcal pyruvate kinase (2012) ACS Chem. Biol. 7: 350-359.
2011
-
Methicillin-resistant Staphylococcus aureus (MRSA) pyruvate kinase as a target for bis-indole alkaloids with antibacterial activities (2011) J. Biol. Chem. 286: 44716-44725.
-
Activity of 3-ketosteroid 9alpha-hydroxylase (KshAB) indicates cholesterol side chain and ring degradation occur simultaneously in Mycobacterium tuberculosis (2011) J. Biol. Chem. 286: 40717-40724.
-
Structure and mechanism of the lipooligosaccharide sialyltransferase from Neisseria meningitidis (2011) J. Biol. Chem. 286: 37237-37248.
-
Structural and kinetic analysis of substrate binding to the sialyltransferase Cst-II from Campylobacter jejuni (2011) J. Biol. Chem. 286: 35922-35932.
-
Crystal structure of New Delhi metallo-beta-lactamase reveals molecular basis for antibiotic resistance (2011) Protein Sci. 20: 1484-1491.
-
Identification of pyruvate kinase in methicillin-resistant Staphylococcus aureus as a novel antimicrobial drug target (2011) Antimicrob. Agents Chemother. 55: 2042-2053.
-
Structural overview of the bacterial injectisome (2011) Curr Opin Microbiol. 14: 3-8.
2010
-
Structure of a SLC26 anion transporter STAS domain in complex with acyl carrier protein: implications for E. coli YchM in fatty acid metabolism (2010) Structure 18: 1450-1462.
-
Interactions of the transmembrane polymeric rings of the Salmonella enterica serovar Typhimurium type III secretion system (2010) MBio 1.
-
A flavin-dependent monooxygenase from Mycobacterium tuberculosis involved in cholesterol catabolism (2010) J. Biol. Chem. 285: 22264-22275.
-
Structure of the bacterial teichoic acid polymerase TagF provides insights into membrane association and catalysis (2010) Nat. Struct. Mol. Biol. 17: 582-589.
-
Crystal structure of the C-terminal domain of the Salmonella type III secretion system export apparatus protein InvA (2010) Protein Sci. 19: 1091-1096.
-
Circular permutation of Bacillus circulans xylanase: a kinetic and structural study (2010) Biochemistry 49: 2464-2474.
-
Cyclobutanone analogues of beta-lactams revisited: insights into conformational requirements for inhibition of serine- and metallo-beta-lactamases (2010) J. Am. Chem. Soc. 132: 2558-2560.
-
Protein crystallography reveals a role for the FS0 cluster of Escherichia coli nitrate reductase A (NarGHI) in enzyme maturation (2010) J. Biol. Chem. 285: 8801-8807.
2009
-
NMR spectroscopic characterization of the sialyltransferase CstII from Campylobacter jejuni: histidine 188 is the general base (2009) Biochemistry 48: 11220-11230.
-
Structural insight into mammalian sialyltransferases (2009) Nat. Struct. Mol. Biol. 16: 1186-1188.
-
Inhibition of Neisseria meningitidis sialic acid synthase by a tetrahedral intermediate analogue (2009) Biochemistry 48: 9194-9201.
-
Insights into the bacterial transferrin receptor: the structure of transferrin-binding protein B from Actinobacillus pleuropneumoniae (2009) Mol. Cell 35: 523-533.
-
Designer enzymes for glycosphingolipid synthesis by directed evolution (2009) Nat. Chem. Biol. 5: 508-514.
-
Structural and kinetic characterizations of the polysialic acid O-acetyltransferase OatWY from Neisseria meningitidis (2009) J. Biol. Chem. 284: 24501-24511.
-
A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system (2009) Nat. Struct. Mol. Biol. 16: 468-476.
-
Insights into positive and negative requirements for protein-protein interactions by crystallographic analysis of the beta-lactamase inhibitory proteins BLIP, BLIP-I, and BLP (2009) J. Mol. Biol. 389: 289-305.
-
Studies of a ring-cleaving dioxygenase illuminate the role of cholesterol metabolism in the pathogenesis of Mycobacterium tuberculosis (2009) PLoS Pathog. 5: e1000344.
-
Characterization of 3-ketosteroid 9{alpha}-hydroxylase, a Rieske oxygenase in the cholesterol degradation pathway of Mycobacterium tuberculosis (2009) J. Biol. Chem. 284: 9937-9946.
2008
-
Structural characterization of the type-III pilot-secretin complex from Shigella flexneri (2008) Structure 16: 1544-1554.
-
Putting glycobiology on a structural footing. (2008) Curr. Opin. Struct. Biol. 18: 525-526.
-
The crystal structure of MexR from Pseudomonas aeruginosa in complex with its antirepressor ArmR (2008) Proc. Natl. Acad. Sci. U.S.A. 105: 14832-14837.
-
The structural basis for T-antigen hydrolysis by Streptococcus pneumoniae: a target for structure-based vaccine design (2008) J. Biol. Chem. 283: 31279-31283.
-
Identification of dynamic structural motifs involved in peptidoglycan glycosyltransfer (2008) J. Mol. Biol. 383: 167-177.
-
Structural details of the glycosyltransferase step of peptidoglycan assembly (2008) Curr. Opin. Struct. Biol. 18: 534-543.
-
Structural analysis of the essential self-cleaving type III secretion proteins EscU and SpaS (2008) Nature 453: 124-127.
-
In vitro selection and characterization of ceftobiprole-resistant methicillin-resistant Staphylococcus aureus (2008) Antimicrob. Agents Chemother. 52: 2089-2096.
-
Piecing together the type III injectisome of bacterial pathogens (2008) Curr. Opin. Struct. Biol. 18: 258-266.
2007
-
The bacterial virulence factor NleA inhibits cellular protein secretion by disrupting mammalian COPII function (2007) Cell Host Microbe 2: 160-171.
-
High-resolution structure of the major periplasmic domain from the cell shape-determining filament MreC (2007) J. Mol. Biol. 372: 1034-1044.
-
Protein modulator of multidrug efflux gene expression in Pseudomonas aeruginosa (2007) J. Bacteriol. 189: 5441-5451.
-
Structural analysis of the alpha-2,3-sialyltransferase Cst-I from Campylobacter jejuni in apo and substrate-analogue bound forms (2007) Biochemistry 46: 7196-7204.
-
The structural basis of glycosidase inhibition by five-membered iminocyclitols: the clan a glycoside hydrolase endoglycoceramidase as a model system (2007) Angew Chem. Int. Ed. Engl. 46: 4474-4476.
-
Structural insight into the transglycosylation step of bacterial cell-wall biosynthesis (2007) Science 315: 1402-1405.
-
Structural and mechanistic analyses of endo-glycoceramidase II, a membrane-associated family 5 glycosidase in the Apo and GM3 ganglioside-bound forms (2007) J. Biol. Chem. 282: 14300-14308.
-
Structural analysis of a prototypical ATPase from the type III secretion system (2007) Nat. Struct. Mol. Biol. 14: 131-137.
-
An arginine ladder in OprP mediates phosphate-specific transfer across the outer membrane (2007) Nat. Struct. Mol. Biol. 14: 85-87.
-
Binding hot spots in the TEM1-BLIP interface in light of its modular architecture (2007) J. Mol. Biol. 365: 663-679.
2006
-
Structure-based mutagenesis of SigE verifies the importance of hydrophobic and electrostatic residues in type III chaperone function (2006) Mol. Microbiol. 62: 928-940.
-
High-throughput screening methodology for the directed evolution of glycosyltransferases (2006) Nat. Methods 3: 609-614.
-
Structural polymorphism in bacterial EspA filaments revealed by cryo-EM and an improved approach to helical reconstruction (2006) Structure 14: 1189-1196.
-
Structural analysis of an “open” form of PBP1B from Streptococcus pneumoniae (2006) Protein Sci. 15: 1701-1709.
-
New structural insights into the bacterial type III secretion system (2006) Trends Biochem. Sci. 31: 223-230.
-
Expanding the thioglycoligase strategy to the synthesis of alpha-linked thioglycosides allows structural investigation of the parent enzyme/substrate complex (2006) J Am. Chem. Soc. 128: 2202-2203.
2005
-
CesT is a multi-effector chaperone and recruitment factor required for the efficient type III secretion of both LEE- and non-LEE-encoded effectors of enteropathogenic Escherichia coli (2005) Mol. Microbiol. 57: 1762-1779.
-
Beta-lactam antibiotic resistance: a current structural perspective (2005) Curr. Opin. Microbiol. 8: 525-533.
-
Structural characterization of the molecular platform for type III secretion system assembly (2005) Nature 435: 702-707.
-
Backbone chemical shift assignments of the LexA catalytic domain in its active conformation (2005) J. Biomol. NMR 31: 371-372.
-
Investigation of the environment surrounding iron-sulfur cluster 4 of Escherichia coli dimethylsulfoxide reductase (2005) Biochemistry 44: 8068-8077.
-
Structure and biochemical analysis of a secretin pilot protein (2005) EMBO J. 24: 1111-1121
-
Structural characterization of a type III secretion system filament protein in complex with its chaperone (2005) Nat. Struct. Mol. Biol. 12: 75-81.
-
Structural and biochemical characterization of a quinol binding site of Escherichia coli nitrate reductase A (2005) J. Biol. Chem. 280: 14836-14843.
-
Structural and mechanistic analysis of sialic acid synthase NeuB from Neisseria meningitidis in complex with Mn2+, phosphoenolpyruvate, and N-acetylmannosaminitol (2005) J. Biol. Chem. 280: 3555-3563.
-
Mechanistic and structural analysis of a family 31 alpha-glycosidase and its glycosyl-enzyme intermediate (2005) J. Biol. Chem. 280: 2105-2115.
2004
-
Structural and biochemical identification of a novel bacterial oxidoreductase (2004) J. Biol. Chem. 279: 50391-50400.
-
Crystal structures of the Apo and penicillin-acylated forms of the BlaR1 beta-lactam sensor of Staphylococcus aureus (2004) J. Biol. Chem. 279: 47278-47287.
-
Structural characterization of the RNase E S1 domain and identification of its oligonucleotide-binding and dimerization interfaces (2004) J. Mol. Biol. 341: 37-54.
-
The catalytic subunit of Escherichia coli nitrate reductase A contains a novel [4Fe-4S] cluster with a high-spin ground state (2004) Biochemistry 43: 5324-5333.
-
Intermediate trapping on a mutant retaining alpha-galactosyltransferase identifies an unexpected aspartate residue (2004) J. Biol. Chem. 279: 28339-28344.
-
Structural analysis of the sialyltransferase CstII from Campylobacter jejuni in complex with a substrate analog (2004) Nat. Struct. Mol. Biol. 11: 163-170.
2003
-
Insights into the respiratory electron transfer pathway from the structure of nitrate reductase A (2003) Nat. Struct. Biol. 10: 681-687.
-
Engineering the primary substrate specificity of Streptomyces griseus trypsin (2003) Biochemistry 42: 9060-9066.
2002
-
One step closer to a sweet conclusion (2002) Chem. Biol. 9: 1270-1273.
-
Signal peptidases (2002) Chem. Rev. 102: 4549-4580.
-
Structural basis for the beta lactam resistance of PBP2a from methicillin-resistant Staphylococcus aureus (2002) Nat. Struct. Biol. 9: 870-876.
-
Crystal structure of the MexR repressor of the mexRAB-oprM multidrug efflux operon of Pseudomonas aeruginosa (2002) J. Biol. Chem. 277: 29253-29259.
-
Crystal structure of a bacterial signal peptidase apoenzyme: implications for signal peptide binding and the Ser-Lys dyad mechanism (2002) J. Biol. Chem. 277: 9512-9519.
2001
-
Catalysis and binding in L-ribulose-5-phosphate 4-epimerase: a comparison with L-fuculose-1-phosphate aldolase (2001) Biochemistry 40: 14772-14780.
-
The structure of L-ribulose-5-phosphate 4-epimerase: an aldolase-like platform for epimerization (2001) Biochemistry 40: 14763-14771.
-
Structural and biochemical characterization of the type III secretion chaperones CesT and SigE (2001) Nat. Struct. Biol. 8: 1031-1036.
-
Crystal structure and kinetic analysis of beta-lactamase inhibitor protein-II in complex with TEM-1 beta-lactamase (2001) Nat. Struct. Biol. 8: 848-852.
-
Crystal structure of LexA: a conformational switch for regulation of self-cleavage. (2001) Cell 106: 585-594.
-
Structure and characterization of AgfB from Salmonella enteritidis thin aggregative fimbriae (2001) J. Mol. Biol. 311: 735-749.
-
Effect of divalent metal cations on the dimerization of OXA-10 and -14 class D beta-lactamases from Pseudomonas aeruginosa (2001) Biochemistry 40: 9412-9420.
-
Crystal structure of the retaining galactosyltransferase LgtC from Neisseria meningitidis in complex with donor and acceptor sugar analogs (2001) Nat. Struct. Biol. 8: 166-175
-
Insights into the molecular basis for the carbenicillinase activity of PSE-4 beta-lactamase from crystallographic and kinetic studies. (2001) Biochemistry 40: 395-402
-
Structure of a sialic acid-activating synthetase, CMP-acylneuraminate synthetase in the presence and absence of CDP (2001) J. Biol. Chem. 276: 8190-8196.
2000
-
The structure of UDP-N-acetylglucosamine 2-epimerase reveals homology to phosphoglycosyl transferases (2000) Biochemistry 39: 14993-15001.
-
Crystal structure of the class D beta-lactamase OXA-10 (2000) Nat. Struct. Biol. 7: 918-925.
-
The structure and mechanism of bacterial type I signal peptidases. A novel antibiotic target (2000) Pharmacol. Ther. 87: 27-49.
-
Crystal structure of enteropathogenic Escherichia coli intimin-receptor complex (2000) Nature 405: 1073-1077.
-
Enteropathogenic E. coli translocated intimin receptor, Tir, interacts directly with alpha-actinin (2000) Curr. Biol. 10: 735-738.
-
Mutational evidence of transition state stabilization by serine 88 in Escherichia coli type I signal peptidase (2000) Biochemistry 39: 7276-7283.
-
The first structure of UDP-glucose dehydrogenase reveals the catalytic residues necessary for the two-fold oxidation (2000) Biochemistry 39: 7012-7023.
-
Structure-based design guides the improved efficacy of deacylation transition state analogue inhibitors of TEM-1 beta-Lactamase(,) (2000) Biochemistry 39: 5312-5321.
-
The role of the conserved box E residues in the active site of the Escherichia coli type I signal peptidase (2000) J. Biol. Chem. 275: 6490-6498.
1999
-
Common protein architecture and binding sites in proteases utilizing a Ser/Lys dyad mechanism (1999) Protein Sci. 8: 2533-2536.
-
Enteropathogenic Escherichia coli translocated intimin receptor, Tir, requires a specific chaperone for stable secretion (1999) Mol Microbiol. 33: 1162-1175.
1998
-
Crystal structure of a bacterial signal peptidase in complex with a beta-lactam inhibitor (1998) Nature 396: 186-190.